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    2k repositories

    • SBMLShowcase

      Public
      OSB showcase of interactions between SBML and NeuroML
      Jupyter Notebook
      •2•1•6•0•Updated Sep 27, 2024Sep 27, 2024

    • osb-model-validation

      Public
      Tools for automated model validation in OpenSourceBrain projects
      XSLT
      •
      GNU Lesser General Public License v3.0
      •9•9•15•0•Updated Sep 24, 2024Sep 24, 2024

    • NEURONShowcase

      Public
      Examples of how to convert NEURON to & from NeuroML
      AMPL
      •2•1•2•0•Updated Sep 24, 2024Sep 24, 2024

    • BrianShowcase

      Public
      A testbed for interactions between Brian and NeuroML2/LEMS
      Python
      •0•1•0•1•Updated Sep 2, 2024Sep 2, 2024

    • OSBv2

      Public
      An updated version of the Open Source Brain platform
      jupyter-notebookneurosciencecomputational-neurosciencejupyterlabnwbneuromldandi-archivenwbexplorernetpyne
      Python
      •
      Other
      •6•11•116•10•Updated Aug 29, 2024Aug 29, 2024

    • OSB_homepage

      Public
      OSB homepage
      HTML
      •
      Apache License 2.0
      •0•0•3•0•Updated Aug 29, 2024Aug 29, 2024

    • CelegansNeuromechanicalGaitModulation

      Public
      C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012
      C
      •6•5•0•2•Updated Aug 21, 2024Aug 21, 2024

    • 243446

      Public
      Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)
      NMODL
      •2•0•0•1•Updated Aug 21, 2024Aug 21, 2024

    • 262670

      Public
      Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)
      Python
      •3•0•1•0•Updated Aug 20, 2024Aug 20, 2024

    • Brunel2000

      Public
      Sparsely connected spiking neuron network from Brunel 2000
      Python
      •
      Other
      •2•4•1•1•Updated Aug 20, 2024Aug 20, 2024

    • OpenCortex

      Public
      A framework for building cortical network models on OSB
      Python
      •5•9•0•1•Updated Aug 19, 2024Aug 19, 2024

    • PyNNShowcase

      Public
      A repository for testing interactions/conversions between NeuroML & PyNN
      Python
      •1•3•0•0•Updated Aug 19, 2024Aug 19, 2024

    • AllenInstituteNeuroML

      Public
      Example files to test interaction between models developed at the Allen Brain Institute and NeuroML
      HTML
      •
      Other
      •10•16•5•1•Updated Aug 19, 2024Aug 19, 2024

    • NetPyNEShowcase

      Public
      NetPyNE & NeuroML interactions
      Python
      •2•3•1•1•Updated Aug 19, 2024Aug 19, 2024

    • Thalamocortical

      Public
      GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
      XSLT
      •
      Other
      •12•9•3•0•Updated Jul 31, 2024Jul 31, 2024

    • OlfactoryTest

      Public
      A repository for testing conversion of a number of elements (mainly ion channels) from olfactory bulb models to NeuroML 1/2
      XSLT
      •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024

    • TheVirtualBrainShowcase

      Public
      Python
      •0•2•0•0•Updated Jul 20, 2024Jul 20, 2024

    • NeuroMorpho

      Public
      Set of example morphologies taken from NeuroMorpho.org in NeuroML format
      Other
      •0•1•0•0•Updated Jun 19, 2024Jun 19, 2024

    • StochasticityShowcase

      Public
      A repository for neuronal models containing stocastic elements (e.g. input currents, syanpses, ion channels) in various formats
      Jupyter Notebook
      •3•1•2•1•Updated Jun 19, 2024Jun 19, 2024

    • WilsonCowan

      Public
      Wilson–Cowan model
      Jupyter Notebook
      •2•11•0•1•Updated Jun 19, 2024Jun 19, 2024

    • MejiasEtAl2016

      Public
      Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex
      Python
      •0•10•4•6•Updated Jun 19, 2024Jun 19, 2024

    • SmithEtAl2013-L23DendriticSpikes

      Public
      Model from: Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo, Smith, Smith, Branco & Häusser, Nature 2013
      pyramidalcellmulticompartmentallayer23pyramidalcell
      Jupyter Notebook
      •
      Other
      •1•3•0•0•Updated Jun 19, 2024Jun 19, 2024

    • SolinasEtAl-GolgiCell

      Public
      GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007
      XSLT
      •
      Other
      •2•2•6•0•Updated Jun 18, 2024Jun 18, 2024

    • NESTShowcase

      Public
      Mapping NeuroML2/LEMS to NEST
      Python
      •1•1•0•0•Updated Jun 17, 2024Jun 17, 2024

    • ghk-nernst

      Public
      Using Goldman-Hodgkin-Katz and Nernst from LEMS/NeuroML
      XSLT
      •3•1•0•1•Updated Jun 13, 2024Jun 13, 2024

    • ArborShowcase

      Public
      Examples of Arbor<->NeuroML
      Jupyter Notebook
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • MOOSEShowcase

      Public
      Showcase project illustrating interactions between MOOSE & NeuroML
      Python
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • DANDIArchiveShowcase

      Public
      Scripts for interacting with the DANDI Archive
      Python
      •5•3•1•1•Updated Jun 10, 2024Jun 10, 2024

    • OSB_API

      Public
      API to access contents of OSB repository. Currently a simple Python API is available
      Python
      •2•4•2•0•Updated Jun 4, 2024Jun 4, 2024

    • BahlEtAl2012_ReducedL5PyrCell

      Public
      A set of reduced models of layer 5 pyramidal neurons from Bahl et al. 2012
      layer5pyramidalcellmulticompartmental
      Jupyter Notebook
      •4•2•0•1•Updated May 31, 2024May 31, 2024