Skip to content

Pull requests: broadinstitute/gatk-sv

New pull request New
23 Open 474 Closed
23 Open 474 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Enhance EvidenceQC outputs to better align with sample QC enhancement New feature or request
#728 opened Sep 26, 2024 by kjaisingh Loading…
@kjaisingh
9
Keep unresolved Manta calls
#723 opened Sep 11, 2024 by CuriousTim Loading…
4
Improve Scramble accuracy for BWA and Dragen 3.7.8
#722 opened Sep 9, 2024 by mwalker174 Loading…
Clean up BAF Test enhancement New feature or request
#721 opened Sep 6, 2024 by kjaisingh • Draft
@kjaisingh
Filter outlier samples in TrainGCNV and GenerateBatchMetrics enhancement New feature or request
#717 opened Aug 26, 2024 by kjaisingh Loading…
1
@kjaisingh
use chrX and chrY to match sex chromosomes
#713 opened Aug 19, 2024 by CuriousTim Loading…
7
Add check for duplicate records to MainVcfQc enhancement New feature or request
#705 opened Aug 9, 2024 by kjaisingh Loading…
1
@kjaisingh
15
Add Scramble metrics to the qc table generated in EvidenceQC
#702 opened Aug 1, 2024 by kirtanav98 • Draft
@kirtanav98
Add genotype filtering Terra workflow configs and documentation
#695 opened Jul 2, 2024 by mwalker174 Loading…
29
Add documentation for the de-novo pipeline
#675 opened May 13, 2024 by VJalili • Draft
2 tasks
12
Refactor workflow inputs/output for consistency
#668 opened Apr 25, 2024 by VJalili • Draft
2 tasks done
Scripts to create downsampled files
#662 opened Apr 2, 2024 by VJalili Loading…
4 tasks done
Remove outliers across per-contig VCFs
#654 opened Mar 11, 2024 by epiercehoffman • Draft
Workflow to apply NCR and reference artifact filters and remove zero-carrier sites
#653 opened Mar 8, 2024 by epiercehoffman • Draft
1
fix: add sd_locs_vcf_index input to SDtoBAF
#644 opened Feb 12, 2024 by simojoe Loading…
1
2
Change default behavior of GatherSampleEvidence to skip running module metrics
#633 opened Jan 31, 2024 by VJalili • Draft
4
Removed pairwise batch effect checks from WDL workflow
#617 opened Nov 9, 2023 by shadizaheri Loading…
4
Add TransferVcfAnnotations workflow
#533 opened May 11, 2023 by mwalker174 • Draft
Extend functionality for outlier sample exclusion workflow
#496 opened Feb 11, 2023 by RCollins13 Loading…
4
Add reclustering WDLs (do not merge)
#446 opened Oct 12, 2022 by mwalker174 • Draft
Update batch effect workflows
#435 opened Oct 5, 2022 by mwalker174 Loading…
an alpha version of a report generator that creats a report of the re…
#416 opened Sep 23, 2022 by shadizaheri Loading…
@VJalili
1
KN Picard Metrics Aggregation Script
#364 opened Jun 29, 2022 by krithikanathamuni • Draft
21
ProTip! What’s not been updated in a month: updated:<2024-09-01.