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Simplify samshee module #268

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grst opened this issue Oct 1, 2024 · 0 comments
Open

Simplify samshee module #268

grst opened this issue Oct 1, 2024 · 0 comments
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enhancement Improvement for existing functionality

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@grst
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grst commented Oct 1, 2024

Description of feature

Sameshee now has a proper CLI implemented, see
https://github.com/lit-regensburg/samshee?tab=readme-ov-file#commandline-tool

With that, I think we should

  • get rid of the custom python script
  • turn samshee into a nf-core/modules module.
@grst grst added the enhancement Improvement for existing functionality label Oct 1, 2024
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