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mnc2nii not populating fields dim_info and slice_code in the NIfTI file #117

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cmadjar opened this issue Oct 1, 2021 · 2 comments
Open

mnc2nii not populating fields dim_info and slice_code in the NIfTI file #117

cmadjar opened this issue Oct 1, 2021 · 2 comments

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@cmadjar
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cmadjar commented Oct 1, 2021

The dim_info and slice_code headers do not appear to be populated in the NIfTI file resulting from mnc2nii conversion.

@zaliqarosli, could you provide details about the mnc2nii binary that was used to produce the CBGR dataset? Thanks!
@zaliqarosli
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zaliqarosli commented Oct 1, 2021 •
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The mnc2nii from the MINC toolkit version 1.9.17 was used to produce the CBIGR dataset.
I have rerun 1 session from that dataset with the MINC toolkit 1.9.18 for CentOS 7.8 (http://packages.bic.mni.mcgill.ca/minc-toolkit/RPM/minc-toolkit-1.9.18-20200813-CentOS_7.8.2003-x86_64.rpm).
Here's the redmine ticket for reference: https://redmine.cbrain.mcgill.ca/issues/19247

The dim_info and slice_code headers missing was reported for the nifti outputs using version 1.9.18. hope this answers your question!

@vfonov
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vfonov commented Oct 1, 2021

Well, there is no functionality for that in mnc2nii.

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@vfonov @cmadjar @zaliqarosli